Welcome to tcs_lib’s documentation!¶
tcs_lib
provides some functionalities to simply or proxy the interaction
with the HET Telescope
Control System (TCS)
This documentation is also available on het-tcs-lib.readthedocs.io.
Installation¶
Installation¶
Instructions¶
The recommended way¶
The recommended way to install tcs_lib
is using pip:
pip install --extra-index-url https://gate.mpe.mpg.de/pypi/simple/ tcs_lib
It’s possible to set the extra index URL permanently by adding the following lines
to the $HOME/.pip/pip.conf
file:
[global]
extra-index-url = https://gate.mpe.mpg.de/pypi/simple
or exporting the environment variable:
export PIP_EXTRA_INDEX_URL=https://gate.mpe.mpg.de/pypi/simple
The list of released versions can be seen on the MPE pypi server. A specific version can be
installed using specifiers,
e.g. issuing pip install tcs_lib==0.1
.
pip
will take care of installing tcs_lib dependances.
We suggest you install tcs_lib
into a virtualenv, in an anaconda/conda or in similar environments.
Of course it is also possible to install tcs_lib
without any of the above with:
pip install --user --extra-index-url https://gate.mpe.mpg.de/pypi/simple/ tcs_lib
This way the executables shipped with tcs_lib
are installed in
$HOME/.local/bin
, so make sure to add this to the environment variable
PATH
to be able to easily use them on the command line.
The use of sudo
when installing with pip is discouraged
and potentially harmful.
From local tcs_lib
copy¶
If you develop tcs_lib
or want to use always the latest version, you can
install it directly from the checked out svn repository.
First you can obtain the source tcs_lib
code with
svn checkout svn://luna.mpe.mpg.de/tcs_lib/trunk tcs_lib
If you already have the repository, you can of course keep it up to date with
svn update
Then you can install the library with:
pip install /path/to/tcs_lib
or
cd /path/to/tcs_lib
pip install .
where /path/to/tcs_lib
is the base directory containing the setup.py
file.
From online svn repository¶
It is also possible to install tcs_lib
directly from the svn repository
with
pip install svn+svn://luna.mpe.mpg.de/tcs_lib/trunk#egg=tcs_lib
If you want to install a specific commit or from a different branch or tag, you can do it issuing one of the following commands
pip install svn+svn://luna.mpe.mpg.de/tcs_lib/trunk@5#egg=tcs_lib
pip install svn+svn://luna.mpe.mpg.de/tcs_lib/tag/v0.0.0#egg=tcs_lib
Other ways¶
Once you obtained the source code as in From local tcs_lib copy, you can install the code also using the good old
cd /path/to/tcs_lib
python setup.py build
python setup.py install
We do not recommend this method.
Dependances¶
Mandatory dependences¶
pyzmq
six
Optional dependences¶
testing:
pytest pytest-cov tox
documentation:
sphinx numpydoc
automatic documentation build:
sphinx-autobuild
Development¶
If you develop tcs_lib
we suggest to checkout the svn
repository and to install it in “editable” mode
and to install all the optional dependances:
cd /path/to/tcs_lib
pip install -e .[livedoc]
You can also use [not recommended]
python setup.py develop
See Contribute to tcs_lib for more information.
tcs_event
- ZeroMQ based listener¶
This module is the core of tcs_lib
.
It is a ZeroMQ based listener that wait for the next TCS event, composed of a header and a payload (a dictionary) and returns it.
tcs_event
– ZMQ based listener of TCS events¶
This module provides functionalities to interface with TCS events.
TCSEvent
is a listener for ZeroMQ events
generated by the HETDEX Telescope Control System (TCS).
Urls and topics to subscribe can be provided when creating a new instance or
using the TCSEvent.connect()
and TCSEvent.subscribe()
.
Events can be received either using the TCSEvent.next()
method or in a
for loop.
SafeTCSEvent
is a fail safe version of TCSEvent
.
TCSDict
is a dictionary class that, on initialisation, makes sure that
the keywords, that TCS needs to parse events, are initialised. It also provides
the TCSDict.topic
property to get and set the topic associated to the
event.
Examples¶
>>> from __future__ import unicode_literals
>>> tcs_dict = TCSDict()
>>> print(*sorted(tcs_dict.keys()))
__data __data_time __key __source __system __wire_time
>>> # get to topic
>>> tcs_dict.topic
Traceback (most recent call last):
...
AttributeError: 'TCSDict' object has no attribute 'topic'
>>> tcs_dict = TCSDict({'__system': 'tcs_lib', '__source': 'tcs_event',
... '__key': 'test'})
>>> print(tcs_dict.topic)
tcs_lib.tcs_event.test
>>> # set topic
>>> tcs_dict.topic = 'tcs_lib1.tcs_event1.test1'
>>> print(tcs_dict['__system'], tcs_dict['__source'], tcs_dict['__key'])
tcs_lib1 tcs_event1 test1
>>> tcs_dict.topic = 42
Traceback (most recent call last):
...
TypeError: The "topic" must be string, not "<... 'int'>"
>>> tcs_dict.topic = 'tcs_lib.tcs_event'
Traceback (most recent call last):
...
ValueError: The topic must be a string with format "system.source.key"
-
class
tcs_lib.tcs_event.
TCSEvent
(urls, topics=None, dates_to_float=False, context=None)[source]¶ Bases:
object
TCS event class that connects to the given list of urls and listens for events. See
next()
Warning
This object currently does not support concurrency.
Parameters: - urls : list of strings
urls to monitor; the list is passed to the
connect()
method- topics : list of strings, optional
topics to subscribe; the list is passed to the
subscribe()
method- dates_to_float : bool, optional
convert
__wire_time
and__data_time
to float before returning the event- context :
zmq.Context
, optional context to use when creating the sockets. If not given, uses the global instance returned by
zmq.Context.instance()
Examples
>>> from tcs_lib import tcs_event >>> events = tcs_event.TCSEvent(["tcp://127.0.0.1:30301", ], ... topics=["tcs.tracker.position", ... "tcs.root.ra_dec"]) >>> for (h, e) in events: ... if e is not None: ... handle(e)
or
>>> while True: ... (h, e) = events.next() ... if e is not None: ... handle(e)
-
subscribe
(topics)[source]¶ Subscribe to each of the topics in the given list.
The subscription mechanism works in the following way:
if
topics
isNone
or an empty list ([]
) and:- no topic has ever been subscribed, subscribe to all (empty string);
- there are already subscribed topics, do nothing;
if
topics
is a non empty list and:- no topic has ever been subscribed, subscribe to the given topics;
- all topics are subscribed (empty string), unsubscribe it and then subscribe to the given topics;
- otherwise subscribe to the new topics, avoiding duplicates
Parameters: - topics : list of strings
topics to subscribe
-
connect
(urls)[source]¶ Connect to each of the urls in the given list.
Note that this does not affect any prior connections. However, receipt order is still at the whim of the producers.
Parameters: - urls : list of strings
urls to monitor; the list is passed to the
connect()
method
-
next
()[source]¶ Returns a tuple containing the next event topic and dictionary received. Blocks indefinitely.
Todo
add timeout?
Returns: - tuple (topic, dict)
topic: string with the topic; dict: dictionary with the event information
Raises: - TCSEventIndexError
if the incoming multipart event does not have two elements
- TCSJSONDecodeError
if the json cannot be correctly decoded
-
class
tcs_lib.tcs_event.
SafeTCSEvent
(log_func, re_raise, *args, **kwargs)[source]¶ Bases:
tcs_lib.tcs_event.TCSEvent
Wrap
TCSEvent.next()
in a try/except block to log exceptions and keep doing.StopIteration
and the exceptions passed tore_raise
are raised again. All the other exceptions are trapped, a message is passed to thelog_func
so that the caller can handle the exception at need and theTCSEvent.next()
method is called again.Important
Do never ever initialise
SafeTCSEvent
with a function that drops the messages: if you do this you are asking for big troubles. The suggested ways are to use either the TCS logging capability (e.g. via thetcs_proxy.tcs_log
class) or thestandard python logging module
to report error messages.Parameters: - log_func : callable
function accepting one arguments: * message (string): the error message with the traceback
- re_raise : iteralbe of exceptions
list of exceptions to re-raise;
StopIteration
is always re-raised- args, kwarg :
position and keyword arguments passed to
TCSEvent
Examples
>>> from __future__ import print_function >>> from tcs_lib import tcs_event >>> from tcs_lib import errors >>> def printer(msg): ... print('[Error message]', msg) >>> events = tcs_event.SafeTCSEvent(printer, [], ... ["tcp://127.0.0.1:30301", ], ... topics=["tcs.tracker.position", ... "tcs.root.ra_dec"]) >>> for (h, e) in events: ... if e is not None: ... handle(e)
Prints to the standard output the error message and the traceback. If e.g. one of the events is
['test', ]
, the following is printed butevents
keeps listening for events:[Error message] It was not possible to retrieve an event because of the following error. If you think that it is a bug an error that should handle implicitly, please report this with **the full traceback** to the developers. Traceback (most recent call last): File "/data01/montefra/HETDEX/Code/tcs_lib/tcs_lib/tcs_event.py", line 271, in next return super(SafeTCSEvent, self).next() File "/data01/montefra/HETDEX/Code/tcs_lib/tcs_lib/tcs_event.py", line 165, in next raise errors.TCSEventIndexError(msg) tcs_lib.errors.TCSEventIndexError: The incoming multipart message ['test'] must have two elements, not 1
If instead the same event comes in and the
SafeTCSEvent
is initialised in the following way:>>> events = tcs_event.SafeTCSEvent(printer, [errors.TCSEventIndexError, ], ... ["tcp://127.0.0.1:30301", ], ... topics=["tcs.tracker.position", ... "tcs.root.ra_dec"])
events
would crash with the above traceback.Attributes: - log_func
same as input
- re_raise : tuple
exceptions to re-raise
-
next
()[source]¶ Fail-safe version of
TCSEvent.next()
.
-
class
tcs_lib.tcs_event.
TCSDict
(*args, **kwargs)[source]¶ Bases:
dict
Dictionary providing the basic keys necessary to comply with event TCS API.
When constructing the object, makes sure that the following keys a present:
__wire_time
(string): the time at which the messaging api put the message on the wire (default: ‘0’);__data_time
(string): a time provided by a developer, ideally this is the temporal reference point for the contents (default:string_helpers.time_str()
);__data
(string): boolean indicating whether a data payload follows (default: ‘false’);__system
(string): the system that generated the event (first token in the event topic: “system.source.key”) (default: empty string)__source
(string): the source that generated the event (second token in the event topic: “system.source.key”) (default: empty string)__key
(string): the key that generated the event (third token in the event topic: “system.source.key”) (default: empty string)
After initializing, execute
ensure_string_times()
. This method can be executed before sending out events, e.g. usingserver.ZMQServer
, to make sure that the times are stored in the correct format.Parameters: - args, kwargs:
arguments to initialise underlying
dict
Attributes: topic
Get or set the topic associated with current dictionary event (as stored in the
__system
,__source
and__key
keys).
-
topic
¶ Get or set the topic associated with current dictionary event (as stored in the
__system
,__source
and__key
keys).Raises: - AttributeError
if, when retrieving the topic, the above keys are empty
- TypeError
if the new topic is not a string
- ValueError
if the new topic is not in the form ‘system.source.key’
-
set_data_time
()[source]¶ reset the
__data_time
value tostring_helpers.time_str()
-
ensure_string_times
()[source]¶ Ensure that the
__wire_time
and__data_time
are strings usingstring_helpers.TIME_FMT
Mock TCS events¶
In order to test tcs_event
and code using it, some TCS event is
needed. Having your own telescope might not be ideal. Therefore we provide a
ZeroMQ server, tcs_lib.zmq_server.ZMQServer
, that can stream TCS like
events, and two event generators, tcs_lib.zmq_server.TCSMockEvent
and
tcs_lib.zmq_server.TCSDBReplay
, that can be plugged into the server.
They are also conveniently packaged and exposed via the tcs_replay
executable described in Stream TCS events.
Stream TCS events¶
tcs_replay
provides tcs_replay
, an executable that allows the user to
replay an sqlite3 database as created during TCS operation or a single mock
event.
If the name of the database is provided, tcs_replay
will reconstruct each
TCS event and send it via a ZMQ socket approximately at the same rate at which
they were created. It is possible to speedup or slowdown the rate at which
events are sent and to filter events via command line options.
If no database name is provided, a mock event is created and sent continuously.
Run tcs_replay -h
for further information:
usage: tcs_replay [-h] [-V] [-u URL] [--wait-setup WAIT_SETUP]
[--serve-forever] [-s SPEEDUP] [-t TOPICS [TOPICS ...]]
[-S {none,__data_time,__wire_time}] [--convert-number]
[--convert-bool] [--sleep SLEEP]
[db_name]
Replays a TCS sqlite database and sends multipart events in the form of
[topic, json(event)] via a ZMQ socket.
positional arguments:
db_name Name of the database to replay. If not given, a single
mock event is sent through the ZMQ socket (default:
None)
optional arguments:
-h, --help show this help message and exit
-V, --version show program's version number and exit
-u URL, --url URL IP address and port to which bind the ZMQ socket
(default: tcp://127.0.0.1:5556)
--wait-setup WAIT_SETUP
Wait for wait_setup seconds after creating the servers
to allow to set up the connection (default: 1.0)
--serve-forever Keep serving events. In the case of the database, it
will restart serving the database entries. (default:
False)
Database options:
The following options have effect only if the name of the database is
provided.
-s SPEEDUP, --speedup SPEEDUP
Speedup to apply when replaying the database. For
example, speedup=1 plays back at the original speed;
speedup=2 plays it twice as fast (default: 1.0)
-t TOPICS [TOPICS ...], --topics TOPICS [TOPICS ...]
List of topics to publish. If no topic is specified,
all the topics will be published. (default: None)
-S {none,__data_time,__wire_time}, --sort-by {none,__data_time,__wire_time}
Method to time-sort the events before serving them. If
'none', no sorting is done and the order of the
database is respected. (default: none)
--convert-number Try to convert values marked as "number" to int or
float (default: False)
--convert-bool Try to convert values marked as "boolean" to ``True``
or ``False`` (default: False)
Mock options:
The following options have effect only if the name of the database is not
provided.
--sleep SLEEP Sleep for sleep seconds before emitting a new signal
(default: 1)
The implementation of this executable can also be used as example when using custom event generators.
server
– ZMQ based server¶
ZMQ based server to stream content and TCS-like event generators.
-
class
tcs_lib.server.
ZMQServer
(url, context=None)[source]¶ Bases:
object
Create a ZeroMQ server that publishes content on the give
ulr
.Sending events is performed by the
send_event()
method usingzmq.Socket.send_multipart()
.send_event()
andstart()
allow to send generic events.send_tcs_event()
is designed to send events that reflect TCS expectations. If thetcs_event
passed to the method does not contain the__wire_time
key, set it totime.time()
.Parameters: - url : string
url and port to bind the socket to
- context :
zmq.Context
, optional context to use when creating the sockets. If not given, uses the global instance returned by
zmq.Context.instance()
-
send_event
(event)[source]¶ Send the event via the socket.
Parameters: - event : list of string
event to send using
zmq.Socket.send_multipart()
; the events are converted to byte string usingstring_to_bytes()
.
-
send_tcs_event
(tcs_topic, tcs_event)[source]¶ Version of
send_event()
specialized to send TCS-like events.Set
__wire_time
in thetcs_event
totime.time()
.If event is a string, decode it into a dictionary using
json.loads()
.Parameters: - tcs_topic : string
topic of the event
- tcs_event : dict or string
event to send
-
start
(events)[source]¶ Start serving events via the socket
Parameters: - events : generator yielding lists of strings or bytes
each event retrieved in a loop and sent using
send_event()
. If one event isNone
, it is not sent.
-
class
tcs_lib.server.
TCSDBReplay
(db_name, sort_by='none', speedup=1.0, topics=None, convert_number=False, convert_bool=False)[source]¶ Bases:
object
Open a TCS sqlite3 database, query it and return one entry at a time when looping or using the
next()
builtin function.Parameters: - db_name : string
file containing the database
- sort_by : string, optional
whether to sort or not the event_ids. Accepted values:
'none'
,'__data_time'
,'__wire_time'
- speedup : float, optional
speedup to use to replay the database. A value larger than 1 fast-forwards the replay, a smaller value slows the replay down
- topics : list, optional
list of topics to return when iterating. If
None
or[]
, all topics are returned.- convert_number, convert_bool : bool, optional
try to convert database entries to number (int or float) and to boolean, according to the value of the
data_type
column. The conversion is fail-safe
Attributes: - event_ids : iterator
results of the query for the
event_id
. The attribute is filled by the_reset_iter()
- start_wire_time, start_iter_time : float
wire time and current time when calling
__next__()
the first time. Call_reset_iter()
to reset them before starting a new iteration
-
_reset_iter
()[source]¶ Reset the status and allow restarting the iterations.
- Create and execute the query to retrieve the
event_id
and save it inevent_ids
. The query is done on theevent
table, if no ordering'none'
or the'__data_time'
ordering is required, or on theattribute
table, if the'__wire_time'
ordering is required. - Unset the
start_wire_time
andstart_iter_time
This method is called when initializing the class. It can be called to reinitialize the iterator.
Raises: - tcs_lib.DBOrderingError
if the ordering is not known
- Create and execute the query to retrieve the
-
__next__
()[source]¶ Get the next element of
event_id
, build the TCS object and return it.Returns: - list of strings or ``None``
if the topic is accepted returns
[topic, json(event)]
, otherwise returnsNone
-
_event_dict
(event_id)[source]¶ Create dictionary representing the event with id
event_id
Parameters: - event_id : string
id of the event
Returns: - result : dictionary
event information
-
_convert_to_type
(value, type_)[source]¶ Try to convert value to the given type, if the conversion is required
Parameters: - value : string
value to convert
- type_ : string
type of value. Known types: “number”, “boolean”, “string”. Any unknown type is treated as a string
Returns: - value : int, float, bool or string
converted value
-
_convert_to_number
(value)[source]¶ Try to convert the input
value
from string toint
orfloat
, in that order. If it fails, returnsvalue
unchanged
TCS proxy¶
tcs_proxy
– Proxy to the TCS modules¶
Testing code that uses TCS logging and the TCS subsystem interface outside of HET is not possible. Therefore one need to create classes that mocks the original and a way to easily switch between the development and the production environment.
The tcs_lib.tcs_proxy
provides a proxy between an application and the
TCS systems. It is a thin layer that initialize the necessary objects and allow
easy access to them in a transparent and flexible way.
After importing the module:
from tcs_lib import tcs_proxy
we must initialize the proxy before being able to use it:
tcs_proxy.init(conf, section='urls')
conf
is a configuration object containing in the
section section
all the entries needed to create the logging object and the
necessary TCS subsystems. The configuration entries necessary to initialize the
proxy are described in init()
. An example
configuration to use to initialize the logger and two TCS subsystems is:
[urls]
# url to use for the TCS logger, if the module implementing it is found
tcs_log = tcp://127.0.0.1:5555
# if the TCS logger is not found, use a mock object and use the file of the
# next option to configuration the python loggers to used for the mocks
tcs_log_mock_path = /path/to/conf_file.cfg
# We also want two TCS subsystems called tcs and virus
subsystem_names = tcs, virus
# the tcs subsystem url. But we don't need the tcs_mock_path since the
# configuration is already in ``tcs_log_mock_path``
tcs = tcp://127.0.0.1:5556
# and now the virus subsystem
virus = tcp://127.0.0.1:5557
# for virus we might have a difference logger configuration file for the
# mock object
virus_mock_path = /path/to/virus_logger.cfg
After the initialisation, the following attributes become available:
tcs_proxy.tcs_log
: this attribute refers either to an instance ofTCSLog.TCSLog
or a wrapper around a standard python logger that exposes thelog_*
methods listend in_MockTCSLog
tcs_proxy.tcs
,tcs_proxy.virus
: these attributes refer either to instances oftcssubsystem.TCSSubSystem
or of a mock class that echoes the method called and their arguments via a standard python logger.
Besides those, the TCS proxy exposes also an other attribute:
tcs_proxy.errors
. If the tcssubsystem
is importable, this
attribute is an alias of the module itself: i.e. tcs_proxy.errors.error
is
equivalent to tcssubsystem.error
. If the module is not found, any variable
name is associated with Exception
: i.e. both tcs_proxy.errors.error
and tcs_proxy.errors.MyPersonalError
are equivalent to Exception
.
This attribute allows to catch and/or raise TCS exceptions, when available, or
generic ones otherwise.
As said the mock objects use python loggers to log messages and method
calls, whose names are {mod_name}.{name}
where mod_name
is the value of
tcs_proxy.mod_name
, defaulting to tcs_lib.tcs_proxy
, and name
is either tcs_log
or the name of the TCS subsystem. For other software
using the proxy it might be preferable to set the mod_name
before
initializing it, in order to own the loggers. So for a package my_package
I advice to do the following:
from tcs_lib import tcs_proxy
tcs_proxy.mod_name = 'my_package.tcs_proxy'
tcs_proxy.init(conf, section='urls')
The initialised proxies can be cleared using the
clear()
function. The TCS proxy will be also
marked as not initialized.
Note
Assigning tcs_proxy.mod_name = 'my_package.tcs_proxy'
after
initializing the proxy results in AttributeError
. If necessary it is
possible to clear()
the proxy, set the
mod_name
and then re-initialize.
Implementation¶
Proxy for the python interface to the HET Telescope Control System (TCS).
This module tries to import tcssubsystem
and TCSLog
:
- if it succeeds, initialize all the requested TCS instances.
- otherwise use some mock classes that log every command are used
-
class
tcs_lib._tcs_proxy.
TCSProxy
(mod_name='tcs_lib._tcs_proxy')[source]¶ Bases:
object
Proxy implementation. One instance is exposed as
tcs_lib.tcs_proxy
.The only method public method is
init()
and must be called before the proxy attributes can be used.Parameters: - mod_name : string, optional
name of the module to use by the mock
TCSLog
andtcssubsystem
Attributes: mod_name
Name of the module used to initialize the proxy.
- tcs_log :
TCSLog.TCSLog
or_MockTCSLog
instance of the TCSLog class or of the corresponding mock version
- {name} :
tcssubsystem.TCSSubSystem
or_MockTCSSubsystem
for each name in the
subsystem_names
configuration option, instance of the TCSSubSystem class or of the corresponding mock version- errors
proxy objects for TCS exceptions. If the
tcssubsystem
module is found, this attribute it’s an alias of the module, otherwise it is an instances of_MockErrors
-
mod_name
¶ Name of the module used to initialize the proxy. Can be modified only before calling
init()
-
init
(conf, section='urls')[source]¶ Initialize the TCSLog and tcssubsystems, or their mock counterpart.
The following configuration entries from the
section
are used:tcs_log
, optional: url to use to initialise theTCSLog.TCSLog
class. If not given, empty or theTCSLog
module is not found, initialize a mock log classtcs_log_mock_path
, optional: if theTCSLog.TCSLog
cannot be initialized, a mock class is used instead. This class is a proxy for a standard python logger with name{mod_name}.tcs_log
. By default theNullHandler
is attached. However it is possible to customize the loggers, using a configuration file according to the logger configuration file format. The name of this configuration file can be passed using thetcs_log_mock_path
option.subsystem_names
, optional: list of comma separated names of TCS subsystems to initialize. For eachname
the following options are used{name}
, optional: url to use to initialise thetcssubsystem.TCSSubSystem
class. If not given, empty or thetcssubsystem
module is not found, initialize a mock subsystem class{name}_mock_path
, optional: the option has the same meaning of thetcs_log_mock_path
one, with the difference that the python logger name use is{mod_name}.{name}
Note
If the logger configuration file contains the configurations for the mock logger and subsystems, there is no need to assign it to every
*_mock_path
, but only to the first one used, e.g.tcs_log_mock_path
.Parameters: - conf :
configparser.ConfigParser
instance configuration files necessary to initialize the TCS log and subsystems.
- section : string, optional
name of the section containing the configuration
-
_init_tcs_log
(conf, section)[source]¶ Initialize the tcs logging
Parameters: - conf :
configparser.ConfigParser
instance configuration files necessary to initialize the TCS log and subsystems.
- section : string, optional
name of the section containing the configuration
Returns: - :class:`TCSLog.TCSLog` or :class:`_MockTCSLog`
- conf :
-
_init_tcs_subystem
(name, conf, section)[source]¶ Initialize the TCS subsystem or mock subsystem and return it.
Parameters: - name : string
name of the subsystem
- conf :
configparser.ConfigParser
instance configuration files necessary to initialize the TCS log and subsystems.
- section : string, optional
name of the section containing the configuration
Returns: - :class:`tcssubsystem.TCSSubSystem` or :class:`_MockTCSSubsystem`
-
class
tcs_lib._tcs_proxy.
_MockErrors
[source]¶ Bases:
object
Instances of this class return an
Exception
as attribute.
-
class
tcs_lib._tcs_proxy.
_MockTCSSubsystem
(name, mod_name, log_conf_file)[source]¶ Bases:
object
Class that log the methods called and their positional and keyword arguments.
The name of the logger used is
{mod_name}.{name}
where name is the name to the constructor.In order to customize this logger, use the ocd configuration file as described here. If
log_conf_file
is an empty string or if the configuration parsing fails, thelogging.NullHandler
is added to the logger used here. In case of a parsing failure a warning will be printed.Parameters: - name: string
name of the instance created
- mod_name : string
name of module to associate to the mock proxy objects; used to create the logger name
- log_conf_file : string
name of the configuration files necessary to initialize the mock tcs log
-
class
tcs_lib._tcs_proxy.
_MockTCSLog
(name, mod_name, log_conf_file)[source]¶ Bases:
tcs_lib._tcs_proxy._MockTCSSubsystem
Replacement for the
TCSLog.TCSLog
when theTCSLog
module is not available.This class translates the
TCSLog.TCSLog
log_*
calls to the appropriate python logging levels:method log level log_debug 10 (DEBUG) log_info 20 (INFO) log_warn 30 (WARNING) log_error 40 (ERROR) log_fatal 50 (CRITICAL) log_alarm 60 The
TCSLog.TCSLog.log_*()
methods have the following signature:log_info(msg, *args)
The log message is formatted with
msg.format(*args)
before emitting it.Warning
Because of the formatting, log messages are emitted by a function in this module and not in the place where the
log_*
method is called.The name of the logger used is
{mod_name}.{name}
. When initialised byTCSProxy
{name}
istcs_log
.Parameters: - name: string
name of the logger to use
- mod_name : string
name of module to associate to the mock proxy objects; used to create the logger name
- log_conf_file : string
name of the configuration files necessary to initialize the mock tcs log
-
class
tcs_lib._tcs_proxy.
_LogCall
(log, obj, function)[source]¶ Bases:
object
Callable class log the call to function with all its positional and keyword arguments.
The function is logged as info.
Parameters: - log :
logging.Logger
logger
- obj, function : string
name of the object and the function called
- log :
Other modules¶
errors
– Error defintions¶
Module with the Exception definitions used in tcs_lib
-
exception
tcs_lib.errors.
TCSLibError
[source]¶ Bases:
Exception
Error used as base class for all the others
-
exception
tcs_lib.errors.
DBOrderingError
[source]¶ Bases:
tcs_lib.errors.TCSLibError
,ValueError
The database ordering keyword is not correct
-
exception
tcs_lib.errors.
ConvertTypeError
[source]¶ Bases:
tcs_lib.errors.TCSLibError
,TypeError
Raised when the type to encode/decode is not correct
-
exception
tcs_lib.errors.
TCSEventIndexError
[source]¶ Bases:
tcs_lib.errors.TCSLibError
,IndexError
Raise when an incoming TCS event is not composes of two parts
-
exception
tcs_lib.errors.
TCSJSONDecodeError
[source]¶ Bases:
tcs_lib.errors.TCSLibError
,ValueError
Raise when the second part of the TCS event is not a valid json
string_helpers
– String/Byte helper functionalities¶
Utilities to deal with strings and bytes for a better python2/3 compatibility
-
tcs_lib.string_helpers.
TIME_FMT
= '{t:.9f}'¶ Default formatter to times in TCS events
-
tcs_lib.string_helpers.
bytes_to_string
(byte, encoding='utf-8')[source]¶ If the input is a string or a list of strings, returns it, otherwise interprets it as a byte string or a list of bytes strings.
Parameters: - byte : (list of) byte string(s)
byte string or list of byte strings to decode
- encoding : string, optional
encoding to use; see Standard Encodings for a list of possible encodings
Returns: - Python2: input; Python3: (list of) string(s).
If the input is not iterable returns it
Raises: - ConvertTypeError
if the input is not a string/byte string or a list thereof
-
tcs_lib.string_helpers.
string_to_bytes
(string, encoding='utf-8')[source]¶ If the input is a byte string or a list of byte strings, returns it, otherwise interprets it as a string or a list of strings.
Parameters: - string : (list of) string(s)
string or list of strings to encode
- encoding : string, optional
encoding to use; see Standard Encodings for a list of possible encodings
Returns: - Python2: input; Python3: (list of) byte string(s).
If the input is not iterable returns it
Raises: - ConvertTypeError
if the input is not a string/byte string or a list thereof
Contribution guide¶
Contribute to tcs_lib
¶
How To¶
The suggested workflow for implementing bug fixes and/or new features is the following:
Identify or, if necessary, add to our redmine issue tracker one or more issues to tackle. Multiple issues can be addressed together if they belong together. Assign the issues to yourself.
Create a new branch from the trunk with a name either referring to the topic or the issue to solve. E.g. if you need to add a new executable, tracked by issue #1111
do_something
:svn cp ^/trunk ^/branches/do_something_1111\ -m 'create branch to solve issue #1111'
Switch to the branch:
svn switch ^/branches/do_something_1111
Implement the required changes and don’t forget to track your progress on Redmine. If the feature/bug fix requires a large amount of time, we suggest, when possible, to avoid one big commit at the end in favour of smaller commits. In this way, in case of breakages, is easier to traverse the branch history and find the offending code. For each commit you should add an entry in the
Changelog
file.If you work on multiple issues on the same branch, close one issue before proceeding to the next. When closing one issue is good habit to add in the description on the redmine the revision that resolves it.
Every function or class added or modified should be adequately documented as described in Coding style.
Documentation is essential both for users and for your fellow developers to understand the scope and signature of functions and classes. If a new module is added, it should be also added to the documentation in the appropriate place. See the existing documentation for examples.
Each executable should be documented and its description should contain enough information and examples to allow users to easily run it.
Every functionality should be thoroughly tested for python 2.7, 3.4, 3.5 and 3.6 in order to ensure that the code behaves as expected and that future modifications will not break existing functionalities. When fixing bugs, add tests to ensure that the bug will not repeat. For more information see Testing.
Once the issue(s) are solved and the branch is ready, merge any pending change from the trunk:
svn merge ^/trunk
While doing the merge, you might be asked to manually resolve one or more conflicts. Once all the conflicts have been solved, commit the changes with a meaningful commit message, e.g.:
merge ^/trunk into ^/branches/do_something_1111
. Then rerun the test suite to make sure your changes do not break functionalities implemented while you were working on your branch.Then contact the maintainer of
tcs_lib
and ask to merge your branch back to the trunk.
Information about branching and merging can be found in the svn book. For any questions or if you need support do not hesitate to contact the maintainer or the other developers.
Coding style¶
All the code should be compliant with the official python style guidelines described in PEP 8. To help you keep the code in spec, we suggest to install plugins that check the code for you, like Synstastic for vim or flycheck for Emacs.
The code should also be thoroughly documented using the numpy style. See the existing documentation for examples.
Testing¶
tcs_lib
uses the testing framework provided by the pytest package. The tests should cover every
aspect of a function or method. If exceptions are explicitly raised, this should
also tested to ensure that the implementation behaves as expected.
The preferred way to run the tests is using tox, an automatised test help
package. If you have installed tox, with e.g. pip install tox
, you can run
it by typing:
tox
It will take care of creating virtual environments for every supported version
of python (2.7, 3.4, 3.5 and 3.6), if it exists on the system, install
tcs_lib
, its dependences and the packages necessary to run the tests and
runs py.test
.
You can run the tests for a specific python version using:
py.test
or:
python setup.py test
The latter command fetches all the needed dependences, among others pytest
itself, will be fetched and installed in a .eggs
directory. Then it will run
py.test
. This command might fail when running in a virtual environment. Use
the option --addopts
to pass additional options to py.test
.
You can run specific tests providing the file name(s) and, optionally the name of a test. E.g.:
py.test tests/test_logging_helper.py # runs only the tests in the logging helper file
py.test tests/test_logging_helper.py::test_log_setup # runs only one test
Relevant command line options:
-v verbose output: print the names and parameters of the
tests
-s capture standard output: can cause weird interactions
with the logging module
A code coverage report is also created thanks to the pytest-cov plugin and can be visualized opening
into a browser cover/index.html
. If you want a recap of the coverage
directly in the terminal you can provide one of the following options when
running py.test
:
--cov-report term
--cov-report term-missing
Besides running the tests, the tox
command also builds, by default, the
documentation and collates the coverage tests from the various python
interpreters and can copy then to some directory. To do the latter create, if
necessary, the configuration file ~/.config/little_deploy.cfg
and add to it
a section called tcs_lib
with either one or both of the following options:
[tcs_lib]
# if given the deploys the documentation to the given dir
doc = /path/to/dir
# if given the deploys the coverage report to the given dir
cover = /path/to/other/dir
# it's also possible to insert the project name and the type of the document
# to deploy using the {project} and {type_} placeholders. E.g
# cover = /path/to/dir/{project}_{type_}
# will be expanded to /path/to/dir/tcs_lib_cover
For more information about the configuration file check little_deploy.
For other command line arguments type:
py.test -h
For a list of available fixtures type:
py.test --fixtures tests/
tox
and pyenv
¶
Many systems have a limited number of python versions installed. pyenv provides ways to have multiple python
versions that can be used by tox
via the tox-pyenv plugin.
Here we outline the steps necessary to make tox
use pyenv
:
Install
pyenv
following these instructions. We suggest to usebrew
under Mac OS X or the automatic installer. When is done, follow the instructions to enablespyenv
.Install the python versions that you need. E.g. if you have python 2.7 and 3.6 on you system, you can install only missing versions, e.g.:
pyenv install 3.4.6 pyenv install 3.5.3
Of course you can also install 2.7 and 3.6 using pyenv.
Install
tox-pyenv
in the same place wheretox
is installed, i.e. either on the system, a virtual environment or apyenv
instance:pip install tox-pyenv
This way
tox
is can usepyenv which
to locate a required python versionThe last step consists in letting
pyenv
know which python versions to use. If you have already set pyenv global to all the version required for testing you should be done. Otherwise go to thetcs_lib
directory and run pyenv local:pyenv local system 3.4.6 3.5.3
This command creates a file called
.python-version
that contains the following three lines:system 3.4.6 3.5.3
It will make
pyenv which
look for python versions in the system directories as well as within thepyenv
directory.If you did installed also other versions of python (e.g. 3.6.0 and 2.7.13) under
pyenv
and want to use them instead of the system ones, you can use:pyenv local 3.6.0 3.4.6 3.5.3 2.7.13
Run
tox
: now you will be able to use all the python version that tox requires.
Documentation¶
To build the documentation you need the additional dependences described in
Optional dependences. They can be installed by hand or during tcs_lib
installation
by executing one of the following commands on a local copy:
pip install /path/to/tcs_lib[doc]
pip install /path/to/tcs_lib[livedoc]
The first install sphinx
, the alabaster
theme and the numpydoc
extension; the second also installs sphinx-autobuild
.
To build the documentation in html format go to the doc
directory and run:
make html
The output is saved in doc/build/html
. For the full list of available
targets type make help
.
If you are updating the documentation and want avoid the
edit-compile-browser refresh
cycle, and you have installed
sphinx-autobuild
, type:
make livehtml
then visit http://127.0.0.1:8000. The html documentation is automatically rebuilt after every change of the source and the browser reloaded.
About¶
LICENSE¶
GNU GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
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The licenses for most software and other practical works are designed
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When we speak of free software, we are referring to freedom, not
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Authors¶
The HETDEX collaboration:
- Francesco Montesano <montefra@mpe.mpg.de>
- Daniel Farrow <dfarrow@mpe.mpg.de>
- Jan Snigula <snigula@mpe.mpg.de>
- Jason R Ramsey <jasonramsey@utexas.edu>
tcs_lib
release notes¶
Development version @ trunk¶
Version 0.5.0¶
- do not term context in
ZMQServer.close
andTCSEvent.close
(issue #2536) - add license GPL v3
- add
tcs_event.TCSDict
to provide basic structure necessary by TCS to parse events (issue #2535) ZMQServer.send_tcs_event
set__wire_time
(issue #2534)
Version 0.4.0¶
- add a
SafeTCSEvent
class (issue #2471)
Version 0.3.0¶
TCSEvent
: receive the full multipart event for better error handling (issue #2314)TCSEvent
,ZMQServer
: add possibility to explicitly pass a context (issue #2331)
Version 0.2.0¶
- Send a single event with the
ZMQServer
(issue #2061) - Add
tcs_proxy
module (issue #2062)
Changelog¶
2018-05-17 Francesco Montesano <montefra@mpe.mpg.de> * ReleaseNotes.rst: rename and update * doc/source/release_notes.rst: added. Resolves issue #2553 * doc/source/index.rst: update * doc/source/conf.py: remove pyhetdex intersphinx (not necessary) 2018-05-17 Francesco Montesano <montefra@mpe.mpg.de> * readthedocs.yml: added 2018-05-09 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: bump version to 0.5.0-post 2018-05-09 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: prepare for v0.5.0 release * ReleaseNotes.md: same 2018-05-09 Francesco Montesano <montefra@mpe.mpg.de> * : merge ^/branches/conform_tcs_dict into ^/trunk 2018-05-09 Francesco Montesano <montefra@mpe.mpg.de> * : merge ^/trunk into ^/branches/conform_tcs_dict 2018-04-30 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/string_helpers.py: function to return a string representation of time.time * tcs_lib/server.py: use it when setting __wire_time * tcs_lib/tcs_event.py: and when setting __data_time * tests/test_server.py: test the changes * tests/test_string_helpers.py: test the changes * tests/test_tcs_event.py: test the changes 2018-04-30 Francesco Montesano <montefra@mpe.mpg.de> * ReleaseNotes.md: update release notes 2018-04-30 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/server.py: always set the __wire_time * tests/test_server.py: test it 2018-04-30 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/tcs_event.py: add dictionary with basic structure need by TCS. Resolves #2535 * tests/test_tcs_event.py: test it 2018-04-27 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/server.py: Server.send_tcs_event set ``__wire_time``. Resolves issue #2534 * tests/test_server.py: update the tests 2018-05-08 Francesco Montesano <montefra@mpe.mpg.de> * LICENSE: added * doc/source/license.rst: properly renamed * doc/source/index.rst: update accordingly * tcs_lib/*.py: add copyright notice 2018-04-30 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/server.py: do not terminate context in ZMQServer.close. Resolves #2536 * tcs_lib/tcs_event.py: do not terminate context in TCSEvent.close. Resolves #2536 * tests/test_server.py: update the tests * tests/test_tcs_event.py: same * ReleaseNotes.md: udate 2018-04-13 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: bump version to 0.4.0-post 2018-04-13 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: prepare for v0.4.0 * ReleaseNotes.md: same * README.md: update 2018-04-13 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/tcs_event.py: add a SafeTCSEvent class. Resolves issue #2471 * tests/test_tcs_event.py: test the new addition * ReleaseNotes.md: update 2018-02-13 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: bump version to 0.3.0-post 2018-02-13 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: prepare for release of v0.3.0 * ReleaseNotes.md: same 2018-02-08 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/_tcs_proxy.py: fix documentation inconsistencies. Resolves issue #2265 2018-02-08 Francesco Montesano <montefra@mpe.mpg.de> * : merge ^/branches/explicit_context/ into ^/trunk 2018-02-08 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: drop deprecated pytest-catchlog * tox.ini: same * tests/test_tcs_proxy.py: adapt to changes in pytest==3.4 2018-02-08 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/server.py: add possibility to explicitly pass a context to the ZMQServer (second part of issue #2331) * tests/test_server.py: test it 2018-02-07 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/tcs_event.py: add possibility to explicitly pass a context to the TCSEvent (first part of issue #2331) * tests/test_tcs_event.py: test it 2018-01-31 Francesco Montesano <montefra@mpe.mpg.de> * : merge ^/branches/recv_multipart into ^/trunk 2018-01-31 Francesco Montesano <montefra@mpe.mpg.de> * ReleaseNotes.md: update 2018-01-30 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/tcs_event.py: remove ``unnecessary while True``. 2018-01-29 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/tcs_event.py: get the full multipart event and then convert to json. Also improve error messages for easier debugging. Resolves issue #2314 * tcs_lib/errors.py: add necessary exceptions * tests/test_tcs_event.py: test the changes 2017-10-17 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: bump version to 0.2.0-post 2017-10-17 Francesco Montesano <montefra@mpe.mpg.de> * ReleaseNotes.md: add release information * setup.py: set version to 0.2.0 2017-10-16 Francesco Montesano <montefra@mpe.mpg.de> * : merge ^/branches/tcs_proxy into ^/trunk 2017-10-16 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/_tcs_proxy.py: add a method to clear the proxies * tests/test_tcs_proxy.py: test it * doc/source/tcs_proxy.rst: document it 2017-10-13 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/_tcs_proxy.py: add ``errors`` attribute * tests/test_tcs_proxy.py: test it * doc/source/tcs_proxy.rst: document it * doc/Makefile: use random port and open the browser 2017-10-10 Francesco Montesano <montefra@mpe.mpg.de> * doc/source/tcs_proxy.rst: add documentation about tcs_lib.tcs_proxy * tcs_lib/_tcs_proxy.py: add {name} attribute to the docs 2017-10-06 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/_tcs_proxy.py: reimplement tcs_proxy from ocd. Issue #2062 * tcs_lib/tcs_proxy.py: public interface to the tcs_proxy * tests/test_tcs_proxy.py: test the tcs proxy * doc/source/tcs_proxy.rst: add the documentation * doc/source/index.rst: add to the index * pytest.ini: ignore tcs_lib/tcs_proxy.py * tox.ini: add dependencies * setup.py: same 2017-09-28 Francesco Montesano <montefra@mpe.mpg.de> * : merge ^/branches/send_event into ^/trunk 2017-09-28 Francesco Montesano <montefra@mpe.mpg.de> * tcs_lib/server.py: add send_event and send_tcs_event methods. Resolves issue #2061 * tests/test_server.py: add tests * tests/conftest.py: update the fixtures * tests/test_tcs_event.py: same 2017-07-05 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: bump version to 0.1.0-pos * : ignore dist and build directories 2017-07-05 Francesco Montesano <montefra@mpe.mpg.de> * setup.py: set version to 0.1.0 ahead of release 2017-07-04 Francesco Montesano <montefra@mpe.mpg.de> * doc/source/authors.rst: added * doc/source/changelog.rs: added * doc/source/contributions.rs: added * doc/source/index.rst: update documentation, add new section * doc/source/install.rs: added * doc/source/licence.rs: added * doc/source/tcs_event.rst: update * doc/source/tcs_replay.rst: update * doc/source/todos.rs: added * doc/source/zmq_server.rst: update * setup.py: fix test dependences * tcs_lib/errors.py: update docstrings * tcs_lib/server.py: same * tcs_lib/string_helpers.py: same * tcs_lib/tcs_event.py: same * tox.ini: fix project name and doc 2017-07-04 Francesco Montesano <montefra@mpe.mpg.de> * doc: added 2017-07-04 Francesco Montesano <montefra@mpe.mpg.de> * .: ignore byproducts * ReleaseNotes.md: remove OCD references * setup.py: same * tcs_lib/__init__.py: same * tcs_lib/errors.py: same * tcs_lib/server.py: same * tcs_lib/tcs_event.py: same * tcs_lib/tcs_replay.py: same * tests: add and adapt tests * setup.cfg: tcs_lib/replay.py doesn't exist anymore 2017-07-04 Francesco Montesano <montefra@mpe.mpg.de> * import code